plink format
This page describes specialized PLINK input and output file formats which are identifiable ... .bcf (1000 Genomes Project binary Variant Call Format, version 2). ,Unless otherwise specified, all multicolumn text files generated by PLINK 2.0 are tab-delimited, with one header line starting with '#'. In the column summaries, ...
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 plink format 相關參考資料
BED file format - PLINK: Whole genome data analysis toolset
This page describes the format of binary PED (BED) files. Consider the following example PED file, test.ped: 1 1 0 0 1 0 G G 2 2 C C 1 2 0 0 1 ... http://zzz.bwh.harvard.edu File format reference - PLINK 1.9 - cog-genomics.org
This page describes specialized PLINK input and output file formats which are identifiable ... .bcf (1000 Genomes Project binary Variant Call Format, version 2). https://www.cog-genomics.org File format reference - PLINK 2.0 - cog-genomics.org
Unless otherwise specified, all multicolumn text files generated by PLINK 2.0 are tab-delimited, with one header line starting with '#'. In the column summaries, ... https://www.cog-genomics.org Output file list - PLINK 1.9 - cog-genomics.org
This is a brief list of all file extensions generated by PLINK 1.9, along with content summaries ... .lgen · --recode lgen[-ref], PLINK long-format genomic data file. https://www.cog-genomics.org PED files - PLINK: Whole genome data analysis toolset
All results are written to files with various extensions. The name of the file is by default plink.ext where .ext will change depending on the ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis ...
will generate a files plink.rlist plink.fam plink.map where the plink.rlist file format is. SNP GENOTYPE (BOTH ALLELES) FID/IID PAIRS . http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will walk through using PLINK to work with the data, using a ... All output files that PLINK generates have the same format: ... http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset
The focus of PLINK is purely on analysis of genotype/phenotype data, so there is ... Flip strand of SNPs; Compress data in a binary file format ... http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9 - cog-genomics.org
The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be referenced. (The structure of these files is described in the file formats appendix.) ... https://www.cog-genomics.org Standard data input - PLINK 2.0 - cog-genomics.org
--vcf loads a genotype VCF file, extracting information which can be represented by the PLINK 2 binary format and ignoring everything else (after applying the ... https://www.cog-genomics.org |