chr 24 in plink
2019年1月9日 — —chr-set is required for chromosome 24 here. Otherwise, it is treated as chrY. It may also affect the results for chromosome 23. To be safe, you ... ,2020年1月7日 — I tried using --allow-extra-chr 0 to include these but it doesn't seem to ... Jan 22 12:06:24 2020 Random number seed: 1579655184 8192 MB ...
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 chr 24 in plink 相關參考資料
Data management - PLINK 1.9 - cog-genomics.org
Irregular output coding. --output-chr <MT code>. Normally, autosomal/sex/mitochondrial chromosome codes in PLINK output files are numeric, e.g. '23 ... https://www.cog-genomics.org Genome-wide LD PLINK | empty file for chromosome 24
2019年1月9日 — —chr-set is required for chromosome 24 here. Otherwise, it is treated as chrY. It may also affect the results for chromosome 23. To be safe, you ... https://www.biostars.org PLINK --allow-extra-chr error - Biostars
2020年1月7日 — I tried using --allow-extra-chr 0 to include these but it doesn't seem to ... Jan 22 12:06:24 2020 Random number seed: 1579655184 8192 MB ... https://www.biostars.org plink --bfile data --filter data.fam 2 - PLINK: Whole genome ...
2017年1月25日 — ./plink --bfile mydata --update-map chr-codes.txt --update-chr --make-bed --out mydata2. In both case, the format of the input file should be two ... http://zzz.bwh.harvard.edu plink --file data --flip list.txt - PLINK: Whole genome data ...
2017年1月25日 — ./plink --bfile mydata --update-map chr-codes.txt --update-chr --make-bed --out mydata2. In both case, the format of the input file should be two ... https://zzz.bwh.harvard.edu PLINK 1.90 beta - cog-genomics.org
was applied simultaneously, and the remaining variant set was not contiguous (so if your only variant filter was --chr on a single chromosome, this bug did not ... https://www.cog-genomics.org PLINK 2.00 alpha - cog-genomics.org
--output-chr · --split-par/--merge-par · --set-all-var-ids ... Operating system, Development (28 Oct), Alpha 2.3 final (24 Jan). Linux AVX2 Intel1, download ... https://www.cog-genomics.org PLINK format - PLINK: Whole genome data analysis toolset
2017年1月25日 — we see plink.frq is. CHR SNP A1 A2 MAF NM 1 snp1 C A 0.25 8 23 snp2 C A 0.2 5 24 snp3 C A 0 1 25 snp4 C A 0.25 ... http://zzz.bwh.harvard.edu |