plink -- make pheno
Missing phenotypes · Minor allele frequencies · Hardy-Weinberg · Mendel errors · Quality scores · Relationships. Main functions. Data management · --make-bed. ,--make-just-bim is a variant of --make-bed which only generates a .bim file, and ... (normally the --missing-phenotype value) representing missing phenotypes.
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 plink -- make pheno 相關參考資料
Association analysis - PLINK 1.9 - cog-genomics.org
Refer to the PLINK 1.07 documentation for more details about the statistical tests ... --make-perm-pheno simply generates the specified number of phenotype ... https://www.cog-genomics.org Complete flag index - PLINK 1.9 - cog-genomics.org
Missing phenotypes · Minor allele frequencies · Hardy-Weinberg · Mendel errors · Quality scores · Relationships. Main functions. Data management · --make-bed.... https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
--make-just-bim is a variant of --make-bed which only generates a .bim file, and ... (normally the --missing-phenotype value) representing missing phenotypes. https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
... 2x per sample... IIDs, 2x per sample, Phenotypes, 2x per sample, Allele calls (unphased) ... (--make-just-bim can be used to update just this file.) A text file with ... https://www.cog-genomics.org Making a phenotype file in PLINK - Biostars
2020年4月15日 — Error: No input dataset. I have also tried this: plink --bfile filename --make-pheno phenotype.txt 2 --make-bed --out newfilename. https://www.biostars.org PLINK format - PLINK: Whole genome data analysis toolset
2017年1月25日 — When using a data generation command (e.g. --make-bed, --recode, etc) as ... plink --bfile mydata --make-pheno site.cov SITE3 --assoc. http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9 - cog-genomics.org
The 'acgt' modifier causes A/C/G/T genotype calls to be generated instead of the PLINK 1.07 default of A/B, while '1234' generates 1/2/3/4 genotypes, and '12' makes all calls 1... https://www.cog-genomics.org Standard data input - PLINK 2.0 - cog-genomics.org
2020年8月31日 — Named categorical phenotypes (a phenotype string which doesn't start with a ... Use --make-pgen (or --make-bed/--make-bpgen) for this. 3. https://www.cog-genomics.org |