plink data
This page describes specialized PLINK input and output file formats which .... Thus genotype data for the first marker ('snp1') is stored in the 4th and 5th bytes. ,Data management. Generate binary fileset. --make-bed. --make-bed creates a new PLINK 1 binary fileset, after applying sample/variant filters and other ...
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 plink data 相關參考資料
Standard data input - PLINK 1.9 - cog-genomics.org
PLINK 1.9 gives you several ways to handle this situation. 1. If you just want to convert your data, don't use any other flags besides --out. For example: plink --file ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
This page describes specialized PLINK input and output file formats which .... Thus genotype data for the first marker ('snp1') is stored in the 4th and 5th bytes. https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
Data management. Generate binary fileset. --make-bed. --make-bed creates a new PLINK 1 binary fileset, after applying sample/variant filters and other ... https://www.cog-genomics.org PLINK 1.9 - cog-genomics.org
Standard data input ... This is a comprehensive update to Shaun Purcell's PLINK command-line ... Continue using PLINK 1.07 for most of these operations. https://www.cog-genomics.org PED files - PLINK: Whole genome data analysis toolset
The name of the file is by default plink.ext where .ext will change .... When using a data generation command (e.g. --make-bed, --recode, etc) as ... http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset
The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis ...
plink --file data --recode. which will output the allele labels as they appear in the original; also, the missing genotype code is preserved if this is ... http://zzz.bwh.harvard.edu Allele frequency - PLINK: Whole genome data analysis toolset
By default, PLINK does not impose any filters on minor allele frequency or genotyping rate. ... plink --file data --mind 0.1 --recode --out cleaned. http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will consider using PLINK to analyse example data: randomly selected genotypes (approximately 80,000 autosomal SNPs) ... http://zzz.bwh.harvard.edu Reference - PLINK: Whole genome data analysis toolset
Option, Parameter/default, Description. Basic input/output. --file, plink}, Specify .ped and .map files. --ped, plink.ped}, Specify .ped file. http://zzz.bwh.harvard.edu |