Plink triallelic
(PLINK forces you to combine '01' with --[output-]missing-genotype when this is necessary to prevent ... PLINK cannot properly resolve genuine triallelic variants. ,2020年1月24日 — PLINK is a versatile program which supports data management, quality ... The usual practice as of this writing is to “split” a triallelic SNP into two ...
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 Plink triallelic 相關參考資料
Accounting for problem SNPS when merging multiple plink files
2015年1月2日 — The webpage you link to says: "PLINK cannot properly resolve genuine triallelic variants. We recommend exporting that subset of the data to ... https://www.biostars.org Data management - PLINK 1.9 - cog-genomics.org
(PLINK forces you to combine '01' with --[output-]missing-genotype when this is necessary to prevent ... PLINK cannot properly resolve genuine triallelic variants. https://www.cog-genomics.org Data Management and Summary Statistics with PLINK ...
2020年1月24日 — PLINK is a versatile program which supports data management, quality ... The usual practice as of this writing is to “split” a triallelic SNP into two ... https://link.springer.com How to deal with triallelic sites from the same SNP chip?
2018年10月21日 — Most of people suggest to remove them by plink function (--exclude). I dont understand why there were many triallelic SNPs in these same SNP ... https://www.researchgate.net Introduction to PLINK
Tri-allelic alleles. PLINK can represent tri-allelic alleles. Only very limited ability to analyse them. Same SNP may appear several times in the. MAP or BIM file. http://www.bioinf.wits.ac.za PLINK 1.90 beta - cog-genomics.org
New functions are not a top priority for now (reaching 95%+ backward compatibility, and supporting dosage/phased/triallelic data, are more important. https://www.cog-genomics.org remove non biallelic SNPs from ped - Biostars
2018年12月23日 — ... merge with another tool, and then use plink --vcf to import from the merged VCF. However, if you just want to get rid of all the triallelic variants, ... https://www.biostars.org Standard data input - PLINK 2.0 - cog-genomics.org
2020年8月31日 — (The structure of these files is described in the PLINK 1.9 file formats ... the variant is triallelic, but only the REF allele frequency is specified), the ... https://www.cog-genomics.org Tri-allelic SNP genotype - Biostars
2019年12月27日 — Because you are working on a microarray dataset you shouldn't expect to find tri-allelic SNPs. Most platform work only with biallelic SNPs, but ... https://www.biostars.org Tri-allelic variants error when loading file in Plink - but there ...
2019年12月23日 — The .tped loader did not properly detect when a line didn't have enough genotypes for the number of samples in the .tfam file. This error is ... https://www.biostars.org |