plink fastphase
(PLINK forces you to combine '01' with --[output-]missing-genotype when this is ... The 'fastphase' modifier causes per-chromosome fastPHASE files to be ... ,I've converted PLINK (PED & MAP) files to fastPHASE input format (--recode-structure) for imputation. After imputation, I want to convert fastPHASE output file ...
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 plink fastphase 相關參考資料
Complete flag index - PLINK 1.9 - cog-genomics.org
--bmerge, Merge a PLINK 1 binary fileset with the main input fileset. --border, Extend all ..... Use "--recode fastphase" or "--recode fastphase-1chr". --recode-lgen ... https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
(PLINK forces you to combine '01' with --[output-]missing-genotype when this is ... The 'fastphase' modifier causes per-chromosome fastPHASE files to be ... https://www.cog-genomics.org fastPHASE output format to PLINK input format - BioStar
I've converted PLINK (PED & MAP) files to fastPHASE input format (--recode-structure) for imputation. After imputation, I want to convert fastPHASE output file ... https://www.biostars.org Fastphase To Plink Format - Biostars
Convert plink files to gen format - use GTOOL ... convert this format to plink's tped format, which is very similar to fastPHASE outputs, just a few ... https://www.biostars.org File format reference - PLINK 1.9 - cog-genomics.org
This page describes specialized PLINK input and output file formats which are ...... With "--recode fastphase", one file is generated per chromosome, and the full ... https://www.cog-genomics.org How to get PHASE file from a vcf file? · Issue #1 · bredelings ...
Then I convert this file to a fastPHASE format as below, vcftools --vcf my.vcf --plink --out my.plink plink -file my.plink --recode fastphase-1chr ... https://github.com Output file list - PLINK 1.9 - cog-genomics.org
This is a brief list of all file extensions generated by PLINK 1.9, along with content .... .recode.phase.inp · --recode fastphase[-1chr], fastPHASE genomic data file. https://www.cog-genomics.org PLINK - Purcell Lab
26.10Can/why can't gPLINK perform a particular PLINK command? . . . . . . . . . . . . . . . . 184 ...... Ouput fastphase format file. --recode-bimbam. http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
This is a comprehensive update to Shaun Purcell's PLINK command-line program, developed by Christopher Chang with support from the NIH-NIDDK's ... https://www.cog-genomics.org Reference - PLINK: Whole genome data analysis toolset
--file, plink}, Specify .ped and .map files ... --out, plink}, Specify output root filename ... --recode-fastphase, Ouput fastphase format file. http://zzz.bwh.harvard.edu |