plink -- snps
Note that this is slightly different from PLINK 1.07's behavior when the main .... --snps-only excludes all variants with one or more multi-character allele codes. , PLINK includes a set of options to calculate pairwise linkage disequilibrium between SNPs, and to present or process this information in ...
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 plink -- snps 相關參考資料
Standard data input - PLINK 2.0 - cog-genomics.org
--snps-only excludes all variants with one or more multi-character allele codes. ... tells PLINK to load all variants between rs1111 and rs2222 inclusive, as well ... https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
Note that this is slightly different from PLINK 1.07's behavior when the main .... --snps-only excludes all variants with one or more multi-character allele codes. https://www.cog-genomics.org PLINK
PLINK includes a set of options to calculate pairwise linkage disequilibrium between SNPs, and to present or process this information in ... http://zzz.bwh.harvard.edu Meta-analysis - PLINK: Whole genome data analysis toolset
SNP SNP idenitifier OR Odds ratio (or BETA, etc) SE Standard error of ... SNPs, writing details to [ plink.prob ] Writing meta-analysis results to ... http://zzz.bwh.harvard.edu Epistasis - PLINK: Whole genome data analysis toolset
All pairwise combinations of SNPs can be tested: although this may or may not be desirable in statistical terms, it is computationally feasible for ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
The first contains the genotype data, with SNPs as rows and individuals as columns, for ... plink --file data --recodeAD --recode-allele recode.txt. http://zzz.bwh.harvard.edu Flow chart - PLINK: Whole genome data analysis toolset
In particular, it is designed to indicate the order in which certain operations are performed (i.e. whether SNPs are excluded before or after ... http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
跳到 Extracting a SNP of interest - Finally, given you've identified a SNP, set of SNPs or region of interest, you might want to extract those SNPs as a ... http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset
PLINK is a free, open-source whole genome association analysis ... subsets (SNPs or individuals); Flip strand of SNPs; Compress data in a ... http://zzz.bwh.harvard.edu Result annotation - PLINK: Whole genome data analysis toolset
To automatically apply information about whether SNPs are functional, ... plink --annotate myfile.assoc attrib=snp129.attrib.gz ranges=glist.txt. http://zzz.bwh.harvard.edu |