plink sample data
Since there are six samples, each marker block has size 2 bytes (six divided by four, rounded up). Thus genotype data for the first marker ('snp1') is stored in the ... ,Variant information + sample ID + genotype call binary file. ... .bgen (Oxford variant info + genomic data binary file) ... .fam (PLINK sample information file).
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 plink sample data 相關參考資料
Data management - PLINK 1.9 - cog-genomics.org
bim + .fam. Any samples/variants removed from the current analysis are also not present in this fileset. (This is the --make-bed step.) ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
Since there are six samples, each marker block has size 2 bytes (six divided by four, rounded up). Thus genotype data for the first marker ('snp1') is stored in the ... https://www.cog-genomics.org File format reference - PLINK 2.0 - cog-genomics.org
Variant information + sample ID + genotype call binary file. ... .bgen (Oxford variant info + genomic data binary file) ... .fam (PLINK sample information file). https://www.cog-genomics.org plink --file data - PLINK: Whole genome data analysis toolset
plink.tped plink.fam. The first contains the genotype data, with SNPs as rows and individuals as columns, for example: if the original file was https://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
89 HapMap samples and 80K random SNPs. The first step is to obtain a working copy of PLINK and of the example data files. Make sure you ... http://zzz.bwh.harvard.edu Resources - PLINK 1.9 - cog-genomics.org
Tutorial data: example.zip (BWH mirror), which contains the following six files: wgas1.ped (sample whole-genome .ped data file) ... http://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
Standard data input. Most of PLINK's calculations operate on tables of samples and variant calls. The following flags are available for defining the form and ... https://www.cog-genomics.org |