plink random sampling
--recode creates a new text fileset, after applying sample/variant filters and other .... --zero-cluster takes a file with variant IDs in the first column and cluster IDs in ... , plink --bfile file1 --extract snps.subset.map --make-bed --out file3 ... you can also just use the UNIX sort to randomly grab lines out of your BIM ...
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 plink random sampling 相關參考資料
Allele frequency - PLINK: Whole genome data analysis toolset
By default, PLINK does not impose any filters on minor allele ... In case/control samples, this test will be based on controls only, unless the ... http://zzz.bwh.harvard.edu Data management - PLINK 1.9 - cog-genomics.org
--recode creates a new text fileset, after applying sample/variant filters and other .... --zero-cluster takes a file with variant IDs in the first column and cluster IDs in ... https://www.cog-genomics.org How To Extract Random Snps From Whole Genome Data? - Biostars
plink --bfile file1 --extract snps.subset.map --make-bed --out file3 ... you can also just use the UNIX sort to randomly grab lines out of your BIM ... https://www.biostars.org Input filtering - PLINK 1.9 - cog-genomics.org
If samples are assigned to clusters (via --within/--family), --keep-clusters and --keep-cluster-names can be used individually or in combination to define a list of ... https://www.cog-genomics.org Keep A Subset Of Samples In Plink - Biostars
Hi because you are using wrong input file, keep command ponly works on ped and map files, if you have only binary files (bed, bim, fam), use ... https://www.biostars.org PLINK
Details on the format of a cluster file can be found here. ... For example, some proportion of the sample might only have been genotyped on a ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
Recode and reorder a sample .... Using the --recodeAD option generates the file plink-recode.raw: ..... Based on a random sampling (--thin). http://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will walk through using PLINK to work with the data, using a range of features: ... 89 HapMap samples and 80K random SNPs. http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset - Shaun Purcell
PLINK is a free, open-source whole genome association analysis toolset, ... based on X chromosome SNPs; Tests of non-random genotyping failure ... tests for stratified samples; Dominant/recessive and... http://zzz.bwh.harvard.edu Standard data input - PLINK 2.0 - cog-genomics.org
tells PLINK to load all variants between rs1111 and rs2222 inclusive, as well as ... Similarly, --thin-indiv removes samples at random by retaining each sample ... https://www.cog-genomics.org |