plink bim
I think the correct format is (in case some codes are commented out): #!/usr/bin/perl # This script takes as input the base filename of binary ...,--make-just-bim is a variant of --make-bed which only generates a .bim file, and --make-just-fam plays the same role for .fam files. Unlike most other PLINK ...
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 plink bim 相關參考資料
BED file format - PLINK: Whole genome data analysis toolset
plink --file test --make-bed --out test ... test.bed test.bim test.fam. The file test.bim is the extended map file, which also includes the names of the ... http://zzz.bwh.harvard.edu Breaking PLINK.bim .bed .fam files into chromosomes - BioStar
I think the correct format is (in case some codes are commented out): #!/usr/bin/perl # This script takes as input the base filename of binary ... https://www.biostars.org Data management - PLINK 1.9
--make-just-bim is a variant of --make-bed which only generates a .bim file, and --make-just-fam plays the same role for .fam files. Unlike most other PLINK ... https://www.cog-genomics.org File format reference - PLINK 1.9 - study
.bed (PLINK binary biallelic genotype table). Primary representation of genotype calls at biallelic variants. Must be accompanied by .bim and .fam files. Loaded ... http://www.cog-genomics.org File format reference - PLINK 2.0
PLINK 1's preferred way to represent genotype calls. Must be accompanied by .bim and .fam files. Loaded with --bfile, and generated by --make-bed. https://www.cog-genomics.org plink --file data --recode - PLINK: Whole genome data analysis ...
plink --file data --recodeAD --recode-allele recode.txt ..... plink --bfile data1 --bmerge data2.bed data2.bim data2.fam --make-bed --out merge. http://zzz.bwh.harvard.edu PLINK: Whole genome data analysis toolset
The name of the file is by default plink.ext where .ext will change ..... The .fam and .bim files are still plain text files: these can be viewed with a ... http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9
The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be referenced. (The structure of these files is described in the file formats appendix.) ... https://www.cog-genomics.org what is 0 in the plink .bim file under allele12 column? - Biostars
In a .ped + .map fileset, it's possible for a variant to have only one distinct allele (everyone's A A or 0 0), or even zero (everyone's 0 0). If a .bim ... https://www.biostars.org |