plink sample
Recode and reorder a sample. A basic, but often useful feature, is to output a dataset: with the PED file markers reordered for physical position, ..., All commands involve typing plink at the command prompt (e.g. DOS ... results-working-sample-missingness-v1.22 --from rs66537222 --to ...
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 plink sample 相關參考資料
PLINK tutorial - PLINK: Whole genome data analysis toolset
89 HapMap samples and 80K random SNPs. The first step is to obtain a working copy of PLINK and of the example data files. Make sure you ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis ...
Recode and reorder a sample. A basic, but often useful feature, is to output a dataset: with the PED file markers reordered for physical position, ... http://zzz.bwh.harvard.edu PED files - PLINK: Whole genome data analysis toolset
All commands involve typing plink at the command prompt (e.g. DOS ... results-working-sample-missingness-v1.22 --from rs66537222 --to ... http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
In addition, several key sample x sample and variant x variant matrix ... position-based SNP-like data for thousands of samples, and it is optimized for this setting. https://www.cog-genomics.org Output file list - PLINK 1.9 - cog-genomics.org
PLINK binary biallelic genotype table. .bed.vmaj, (automatic), Variant-major .bed file (when input .bed is sample-major) . https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
--make-bed creates a new PLINK 1 binary fileset, after applying sample/variant filters and other operations below. For example,. plink --file text_fileset --maf 0.05 ... https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
The following flags allow you to exclude samples and/or variants from an analysis batch based on a ... --attrib-indiv <sample attrib file> [boolean condition]. https://www.cog-genomics.org File format reference - PLINK 2.0 - cog-genomics.org
eigenvec file is a text file with a header line and between 1+V and 3+V columns per sample, where V is the number of requested principal components. The first ... https://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
VCF files just contain sample IDs, instead of the distinct family and within-family IDs tracked by PLINK. We offer three ways to convert these IDs: --double-id causes ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
fam file.) The next two bits store the second sample's genotype code, and so on for the 3rd and 4th samples. The second byte stores genotype codes for the 5th ... https://www.cog-genomics.org |