plink -- within
If you add the 'counts' modifier, an allele count report is written to plink.frq.count instead. Alternatively, you can use --freq with --within/--family to write a ... ,The first three bytes should be 0x6c, 0x1b, and 0x01 in that order. (There are old versions of the .bed format which start with a different "magic number"; PLINK ...
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 plink -- within 相關參考資料
Association analysis - PLINK: Whole genome data analysis ...
The basic tests can be performed with permutation, described in the ... over each phenotype, e.g. instead of a single plink.assoc output file, ... http://zzz.bwh.harvard.edu Basic statistics - PLINK 1.9 - cog-genomics.org
If you add the 'counts' modifier, an allele count report is written to plink.frq.count instead. Alternatively, you can use --freq with --within/--family to write a ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
The first three bytes should be 0x6c, 0x1b, and 0x01 in that order. (There are old versions of the .bed format which start with a different "magic number"; PLINK ... https://www.cog-genomics.org IBSIBD - PLINK: Whole genome data analysis toolset
PLINK also has functions to detect specific segments shared between ... The pairwise clustering based on IBS, as outlined in the previous ... http://zzz.bwh.harvard.edu Input filtering - PLINK 1.9 - cog-genomics.org
If the first entry in the filter description is a negative match, you now must precede the '-' with a comma, e.g.. --attrib snps.txt ,-failed. Without the comma, the PLINK ... https://www.cog-genomics.org PLINK
PLINK will generate a number of standard summary statistics that are useful ... HINT To test for case/control differences in missingness, see the ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis ...
To create a file with SNP genotypes recoded in terms of additive and dominant ... plink --file data --recodeAD --recode-allele recode.txt. http://zzz.bwh.harvard.edu plink --file mydata --tdt - PLINK: Whole genome data analysis ...
The main output file, plink.tdt, contains the following fields: ... The parenTDT assumes homogeneity within families rather than between families, ... http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
4: This was not fully developed in PLINK 1.07, and has been superseded by other IBD analysis packages. 5: PLINK's haplotype phasing and imputation ... https://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be referenced. (The structure of these files is described in the file formats appendix.) ... https://www.cog-genomics.org |