plink heterozygous
plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset ... Normally, heterozygous haploid and nonmale Y chromosome genotype calls are logged to ... ,haploid genotypes present (see plink.hh )." This is usually caused by male heterozygous calls in the X chromosome pseudo-autosomal region. Check the variants ...
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 plink heterozygous 相關參考資料
Basic statistics - PLINK 1.9 - cog-genomics.org
Allele frequency. --freq [counts | case-control}] ['gz']. --freqx ['gz'] (alias: --frqx). By itself, --freq writes a minor allele frequency report to plink.frq. If you add the '&nb... https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
plink --file text_fileset --maf 0.05 --make-bed --out binary_fileset ... Normally, heterozygous haploid and nonmale Y chromosome genotype calls are logged to ... https://www.cog-genomics.org Errors and warnings - PLINK 1.9 - cog-genomics.org
haploid genotypes present (see plink.hh )." This is usually caused by male heterozygous calls in the X chromosome pseudo-autosomal region. Check the variants ... https://www.cog-genomics.org File format reference - PLINK 1.9 - cog-genomics.org
00, Homozygous for first allele in .bim file. 01, Missing genotype. 10, Heterozygous. 11, Homozygous for second allele in .bim file ... https://www.cog-genomics.org How to interpret heterozygosity rate ? - Biostars
2018年10月24日 — heterozygosity plink • 8.0k views ... may suggest that: Only one individual with het 0.2 shows relatively high autosomal heterozygosity deviation. https://www.biostars.org How to study runs of homozygosity using PLINK? A guide for ...
2020年1月29日 — Guidelines for a robust and uniform ROH analysis in PLINK using ... SNP in a scanning window, adjacent heterozygous SNPs may cause the ... https://bmcgenomics.biomedcent Input filtering - PLINK 1.9 - cog-genomics.org
--exclude does the same for all listed variants. Note that this is slightly different from PLINK 1.07's behavior when the main input fileset contains duplicate variant ... https://www.cog-genomics.org Module 2: Introduction to PLINK and Quality Control
so each byte can store 4 genotypes. PLINK uses the following two-bit coding of genotypes: 00 = A1/A1 (Homozygous non-reference). 01 = A1/A2 (Heterozygous). https://jvanderw.une.edu.au Summary statistics - PLINK
2017年1月25日 — PLINK will generate a number of standard summary statistics that are ... For the males, heterozygous X and heterozygous Y genotypes are ... http://zzz.bwh.harvard.edu |