plink gene set analysis
Gene set—log10 p-values from the CD data self-contained gene-set analysis for MAGMA and PLINK. Panel (A) shows the PLINK-avg (no pruning) results ... , Alternatively, sets can be specified (e.g. to test only the most significant 100 SNPs against all other SNPs, or against themselves, etc). The output ...
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 plink gene set analysis 相關參考資料
Association analysis - PLINK 1.9 - cog-genomics.org
'set-test' tests the significance of variant sets; see below for details. ... components analysis corrects for stratification in genome-wide association studies. https://www.cog-genomics.org Comparison of self-contained gene-set analysis results. Gene ...
Gene set—log10 p-values from the CD data self-contained gene-set analysis for MAGMA and PLINK. Panel (A) shows the PLINK-avg (no pruning) results ... https://www.researchgate.net Epistasis - PLINK: Whole genome data analysis toolset
Alternatively, sets can be specified (e.g. to test only the most significant 100 SNPs against all other SNPs, or against themselves, etc). The output ... http://zzz.bwh.harvard.edu Gene Set Analysis: A Step-By-Step Guide - NCBI - NIH
Although methods for gene-set analyses (GSA), also called pathway analyses, have been around for more than a decade, the field is still ... https://www.ncbi.nlm.nih.gov plink --file mydata - PLINK: Whole genome data analysis toolset
set defines which SNPs are in which set (see this section for more information on defining sets). This command will generate a file plink.T2 which ... https://zzz.bwh.harvard.edu PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will consider using PLINK to analyse example data: ... rates and allele frequency were automatically set to exclude nobody. https://zzz.bwh.harvard.edu PLINK: A Tool Set for Whole-Genome Association and ...
Many existing genetic-analysis tools are not designed to handle such large data sets in a convenient manner and do not necessarily exploit the new ... https://www.sciencedirect.com PLINK: Whole genome data analysis toolset
PLINK is a free, open-source whole genome association analysis ... A set of proxy associaiton" methods to study single SNP associations in ... http://zzz.bwh.harvard.edu |