plink -- keep
(PLINK forces you to combine '01' with --[output-]missing-genotype when this is necessary to prevent missing genotypes from becoming indistinguishable from A1 ... ,--keep accepts a space/tab-delimited text file with family IDs in the first column ... when the main input fileset contains duplicate variant IDs: PLINK 1.9 removes ...
| 相關軟體 KiTTY 資訊 | |
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 plink -- keep 相關參考資料
Complete flag index - PLINK 1.9 - cog-genomics.org
Preserve original A1/A2 allele encoding, instead of forcing A2 to be the major allele. --keep-autoconv, Given --file/--tfile/--lfile input, do not delete autogenerated ... https://www.cog-genomics.org Data management - PLINK 1.9 - cog-genomics.org
(PLINK forces you to combine '01' with --[output-]missing-genotype when this is necessary to prevent missing genotypes from becoming indistinguishable from A1 ... https://www.cog-genomics.org Input filtering - PLINK 1.9 - cog-genomics.org
--keep accepts a space/tab-delimited text file with family IDs in the first column ... when the main input fileset contains duplicate variant IDs: PLINK 1.9 removes ... https://www.cog-genomics.org Keep A Subset Of Samples In Plink - Biostars
Hi because you are using wrong input file, keep command ponly works on ped and map files, if you have only binary files (bed, bim, fam), use ... https://www.biostars.org plink --file data --flip list.txt - PLINK: Whole genome data ...
By default, any --recode option, and also --make-bed will preserve all genotypes exactly as they are. To set to missing Mendel errors or ... https://zzz.bwh.harvard.edu PLINK 2.00 alpha - cog-genomics.org
pvar file (and conversely, when --vcf/--bcf is used with bare --keep-autoconv, the .pvar is not compressed). 10 Mar: Fixed --make-pgen segfault that occurred when ... https://www.cog-genomics.org Standard data input - PLINK 1.9 - cog-genomics.org
--keep-autoconv. PLINK 1 binary is PLINK 1.9's preferred input format. In fact, PLINK 1.9 automatically converts most other formats to PLINK 1 binary before the ... https://www.cog-genomics.org Standard data input - PLINK 2.0 - cog-genomics.org
--keep accepts one or more space/tab-delimited text files with sample IDs, and removes all unlisted samples from the current analysis; --remove does the same for ... https://www.cog-genomics.org |