plink -- adjust
with --assoc will make PLINK report allele counts, rather than ..... The p-value for the SNP term or terms in the model will be adjusted for the ...,跳到 adjusted - *.adjusted (basic multiple-testing corrections). Produced by --adjust. A text file with a header line, and then one line per set or polymorphic ...
| 相關軟體 PuTTY 資訊 | |
|---|---|
 plink -- adjust 相關參考資料
Association analysis - PLINK 1.9 - cog-genomics.org
Refer to the PLINK 1.07 documentation for more details about the statistical tests employed. When the ... 'fisher-midp' also applies Lancaster's mid-p adjustment. https://www.cog-genomics.org Association analysis - PLINK: Whole genome data analysis toolset
with --assoc will make PLINK report allele counts, rather than ..... The p-value for the SNP term or terms in the model will be adjusted for the ... http://zzz.bwh.harvard.edu File format reference - PLINK 1.9 - cog-genomics.org
跳到 adjusted - *.adjusted (basic multiple-testing corrections). Produced by --adjust. A text file with a header line, and then one line per set or polymorphic ... https://www.cog-genomics.org PLINK
Certain PLINK commands allow variable options to be passed, in addition to the standard arguments. These typically modify the behavior of the ... http://zzz.bwh.harvard.edu plink --file data --recode - PLINK: Whole genome data analysis toolset
plink --file data --recodeAD --recode-allele recode.txt ..... to set the number of SNPs considered upstream and downstream; the maximum ... http://zzz.bwh.harvard.edu PLINK 1.9 - cog-genomics.org
We recommend migrating away from PLINK 1 here, but if that's not practical, keep a permanent copy of the PLINK 1.07 binary around and modify the relevant ... https://www.cog-genomics.org PLINK 2.0 - cog-genomics.org
PLINK 2.0 alpha was developed by Christopher Chang, with support from GRAIL, Inc. and Human Longevity, Inc., and substantial input from Stanford's ... https://www.cog-genomics.org PLINK tutorial - PLINK: Whole genome data analysis toolset
In this tutorial, we will consider using PLINK to analyse example data: ..... plink --bfile hapmap1 --pheno pop.phe --assoc --adjust --out as3. http://zzz.bwh.harvard.edu Reference - PLINK: Whole genome data analysis toolset
--file, plink}, Specify .ped and .map files ..... plink.adjust, --adjust, Adjusted significance values (multiple testing). plink.assoc, --assoc ... http://zzz.bwh.harvard.edu Standard data input - PLINK 1.9 - cog-genomics.org
The --bfile flag causes the binary fileset plink.bed + plink.bim + plink.fam to be ... and the autoconverter functions will be adjusted then to target the new format. https://www.cog-genomics.org |