microrna blast
download all known miRNA of vertebrate from miRbase and align with your novel miRNA by using bowtie software.While align with bowtie use ...,Is there any tool/ software to find the microRNAs regulating a given set of known .... So I dont think that BLAST is the proper way to find targets of an miRNA and ...
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 microrna blast 相關參考資料
bioinformatics - miRNA analysis just using BLAST against mirbase ...
You don't need to use TopHat but it is better to use bowtie instead of BLAST . First of all you need to get rid of the adapter sequences (along ... https://biology.stackexchange. blast a set of microrna against miRbase microrrna - Biostars
download all known miRNA of vertebrate from miRbase and align with your novel miRNA by using bowtie software.While align with bowtie use ... https://www.biostars.org Given a gene or its mRNA, is there any tool to find the microRNAs ...
Is there any tool/ software to find the microRNAs regulating a given set of known .... So I dont think that BLAST is the proper way to find targets of an miRNA and ... https://www.researchgate.net How to tune blast parameters when looking for miRNAs? - Biostars
You can try the the -task option and set it to blastn-short which is optimized for shorter query sequences (<30 nucleotides). From an earlier ... https://www.biostars.org logo miROrtho: the catalogue of animal microRNA genes - CEGG
All miRNAs of one species and their corresponding family alignment picture can be ... Using the BLAST Search a FASTA sequence can be used to find a miRNA ... http://cegg.unige.ch MicroRNA blast against miRbase? [Solved] - ResearchGate
I did an experiment using microRNA NGS and because of lack of funds we did the alignment of microRNA against zebarfish microrna and I got some novel ... https://www.researchgate.net miRBase
MicroRNA Gene Ontology annotations. You might have noticed some additional information on the mature miRNA pages in the last few weeks. See for example: ... http://www.mirbase.org miRNA blast to RNA database? - Biostars
If someone want to know, I solve this by simple blast process, convertion to DNA is not necesary; formatdb -i file_data_base.fa -o T -p F. https://www.biostars.org miRNAminer
Given a search query, candidate homologs are identified using BLAST search and then tested for their known miRNA properties, such as secondary structure, ... http://groups.csail.mit.edu Search - miRBase
Single sequence searches: Paste a sequence here to search for similarity with miRBase miRNA sequences (max size 1000 nts). You can choose to search ... http://www.mirbase.org |